Genes Under QTL for QMATR7.1 (v1.4)


QTL Info

Version QTL Name Linkage Group bp_start bp_end Description
1.4 QMATR7.1 7 52105721 53619925 Cold tolerance - time to end: Mean

 

Genes Under QTL (total genes found: 81)

Selection signature information is provided based on Mace et al 2013 and Mace et al 2014, which identified signatures of purifying and balancing selection based on whole genome resequencing of 47 individuals categorised into three groups (1. Wild and Weedy genotypes, 2. Landraces, 3. Improved Inbreds).

Regions of the genome under purifying and balancing selection were identified using the population genetics summary statistics (θπ, θw, Tajima’s D and FST) in the following three population pairwise comparisons: (i) wild and weedy versus landraces to identify domestication events, (ii) landraces versus improved inbreds to identify improvement events, (iii) wild and weedy versus improved inbreds to identify both domestication and improvement events.

Version Gene Name LG bp_start bp_end Annotation Selection Signature Browse gene at JGI
1.4 Sb07g020120 7 52156302 52158545 similar to Transporter-like protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020120
1.4 Sb07g020130 7 52159227 52162962 similar to Os08g0411200 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020130
1.4 Sb07g020150 7 52204703 52205718 similar to Aquaporin TIP5-1 Purifying (Domestication/Improvement) https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020150
1.4 Sb07g020160 7 52214082 52216013 similar to Putative disease resistance protein Invariant: cultivated https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020160
1.4 Sb07g020166 7 52243256 52244832 similar to TA8 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020166
1.4 Sb07g020170 7 52248226 52251142 similar to Adenosine 5'-phosphosulfate reductase 5 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020170
1.4 Sb07g020180 7 52252071 52253210 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020180
1.4 Sb07g020190 7 52266562 52268940 similar to Putative cell division cycle protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020190
1.4 Sb07g020200 7 52270863 52274888 similar to Putative uncharacterized protein OSJNBa0007M04.36 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020200
1.4 Sb07g020210 7 52303052 52303547 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020210
1.4 Sb07g020220 7 52325094 52328490 similar to Putative uncharacterized protein OSJNBa0007M04.37 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020220
1.4 Sb07g020230 7 52420652 52420978 similar to Os08g0414500 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020230
1.4 Sb07g020240 7 52456472 52459433 weakly similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020240
1.4 Sb07g020250 7 52467766 52468494 weakly similar to Putative uncharacterized protein Invariant: cultivated https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020250
1.4 Sb07g020260 7 52484703 52488056 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020260
1.4 Sb07g020270 7 52610480 52616205 similar to Putative trehalose-6-phosphate synthase https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020270
1.4 Sb07g020280 7 52639404 52642066 similar to Chromosome chr5 scaffold_2, whole genome shotgun sequence https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020280
1.4 Sb07g020290 7 52667050 52668878 similar to Os08g0415600 protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020290
1.4 Sb07g020300 7 52685122 52689766 similar to Homeodomain leucine zipper protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020300
1.4 Sb07g020310 7 52723574 52727545 similar to DEAD-box ATP-dependent RNA helicase 29 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020310
1.4 Sb07g020330 7 52752852 52754072 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020330
1.4 Sb07g020335 7 52754411 52758032 similar to Os08g0416400 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020335
1.4 Sb07g020340 7 52819468 52819737 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020340
1.4 Sb07g020350 7 52856598 52859572 similar to Putative uncharacterized protein Balancing (improvement/domestication) https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020350
1.4 Sb07g020360 7 52859731 52860525 similar to Putative 2-oxoglutarate-dependent dioxygenase Invariant: cultivated https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020360
1.4 Sb07g020370 7 52864463 52865961 similar to Putative 2-oxoglutarate-dependent dioxygenase https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020370
1.4 Sb07g020380 7 52906535 52909112 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020380
1.4 Sb07g020390 7 52910744 52911776 similar to Putative 2-oxoglutarate-dependent dioxygenase https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020390
1.4 Sb07g020395 7 52922013 52922641 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020395
1.4 Sb07g020400 7 52983367 52989640 similar to Os02g0653400 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020400
1.4 Sb07g020405 7 53059068 53061691 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020405
1.4 Sb07g020410 7 53066403 53070812 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020410
1.4 Sb07g020420 7 53119183 53120940 similar to P450 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020420
1.4 Sb07g020430 7 53124431 53127123 Predicted protein Balancing (improvement/domestication) https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020430
1.4 Sb07g020440 7 53129847 53130559 Predicted protein Balancing (improvement/domestication) https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020440
1.4 Sb07g020450 7 53139483 53140031 weakly similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020450
1.4 Sb07g020470 7 53144951 53157608 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020470
1.4 Sb07g020490 7 53181216 53184235 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020490
1.4 Sb07g020500 7 53188283 53193378 similar to NB-ARC domain, putative https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020500
1.4 Sb07g020510 7 53283632 53287625 similar to Putative permease https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020510
1.4 Sb07g020520 7 53330191 53331059 similar to Putative uncharacterized protein P0027G10.62 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020520
1.4 Sb07g020530 7 53336793 53337458 weakly similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020530
1.4 Sb07g020535 7 53347673 53355742 similar to Putative uncharacterized protein OSJNBa0077M12.106 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020535
1.4 Sb07g020540 7 53358353 53359060 weakly similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020540
1.4 Sb07g020550 7 53363896 53366997 weakly similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020550
1.4 Sb07g020553 7 53368003 53368656 similar to Putative uncharacterized protein OSJNBb0089F16.19 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020553
1.4 Sb07g020560 7 53378618 53379319 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020560
1.4 Sb07g020570 7 53425476 53426562 weakly similar to Putative uncharacterized protein OSJNBa0077M12.112 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020570
1.4 Sb07g020580 7 53427500 53432993 similar to Putative uncharacterized protein OSJNBa0077M12.113 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020580
1.4 Sb07g020590 7 53440628 53442349 weakly similar to Arm repeat-containing protein-like https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020590
1.4 Sb07g020600 7 53445014 53448100 similar to DNA helicase homolog, putative Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020600
1.4 Sb07g020610 7 53460598 53465929 similar to Receptor like protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020610
1.4 Sb07g020620 7 53467060 53467959 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020620
1.4 Sb07g020630 7 53474889 53477282 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020630
1.4 Sb07g020640 7 53477749 53481977 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020640
1.4 Sb07g020650 7 53503552 53509157 similar to Betaine aldehyde dehydrogenase https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020650
1.4 Sb07g020660 7 53514883 53519812 similar to Putative uncharacterized protein P0456B03.107 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020660
1.4 Sb07g020670 7 53522195 53536100 similar to Os08g0425100 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020670
1.4 Sb07g020680 7 53546376 53548860 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020680
1.4 Sb07g020690 7 53556511 53558726 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020690
1.4 Sb07g020700 7 53568974 53570779 similar to Endoglucanase 21 precursor https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020700
1.4 Sb07g020710 7 53589671 53591707 Predicted protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020710
1.4 Sb07g020730 7 53611353 53612423 similar to OSIGBa0102I15.8 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020730
1.4 Sb07g020740 7 53617623 53619660 similar to Inositol polyphosphate-5-phosphatase-like https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020740
1.4 Sb07g020140 7 52199325 52200338 similar to Putative transposase https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020140
1.4 Sb07g020145 7 52200345 52200704 similar to Putative uncharacterized protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020145
1.4 Sb07g020163 7 52235379 52235588 similar to OSJNBb0014D23.6 protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020163
1.4 Sb07g020255 7 52474165 52477836 similar to Os08g0176000 protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020255
1.4 Sb07g020303 7 52702483 52705841 weakly similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020303
1.4 Sb07g020306 7 52718119 52719309 weakly similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020306
1.4 Sb07g020320 7 52748500 52749154 weakly similar to Os07g0512100 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020320
1.4 Sb07g020375 7 52880884 52881630 weakly similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020375
1.4 Sb07g020415 7 53107272 53107670 similar to Os06g0271400 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020415
1.4 Sb07g020460 7 53143731 53144741 weakly similar to Transposon protein, putative, CACTA, En/Spm sub-class https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020460
1.4 Sb07g020480 7 53164417 53165240 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020480
1.4 Sb07g020505 7 53194040 53194653 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020505
1.4 Sb07g020515 7 53306802 53308307 weakly similar to Putative non-LTR retroelement reverse transcriptase https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020515
1.4 Sb07g020556 7 53373920 53375564 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020556
1.4 Sb07g020705 7 53575490 53576127 Predicted protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020705
1.4 Sb07g020715 7 53609031 53609363 similar to OSIGBa0132O24.3 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020715
1.4 Sb07g020720 7 53610255 53610927 similar to OSIGBa0102I15.8 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb07g020720