Genes Under QTL for QPCGA4.1 (v1.4)


QTL Info

Version QTL Name Linkage Group bp_start bp_end Description
1.4 QPCGA4.1 4 60735245 60938897 Total phenolic content in gallic acid equivalents (g of GAE/kg of flour)

 

Genes Under QTL (total genes found: 20)

Selection signature information is provided based on Mace et al 2013 and Mace et al 2014, which identified signatures of purifying and balancing selection based on whole genome resequencing of 47 individuals categorised into three groups (1. Wild and Weedy genotypes, 2. Landraces, 3. Improved Inbreds).

Regions of the genome under purifying and balancing selection were identified using the population genetics summary statistics (θπ, θw, Tajima’s D and FST) in the following three population pairwise comparisons: (i) wild and weedy versus landraces to identify domestication events, (ii) landraces versus improved inbreds to identify improvement events, (iii) wild and weedy versus improved inbreds to identify both domestication and improvement events.

Version Gene Name LG bp_start bp_end Annotation Selection Signature Browse gene at JGI
1.4 Sb04g030760 4 60735694 60739260 similar to Gamma-tocopherol methyltransferase https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030760
1.4 Sb04g030770 4 60755202 60770249 similar to Putative growth-regulating factor 1 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030770
1.4 Sb04g030780 4 60780939 60788792 similar to Coatomer subunit delta-3 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030780
1.4 Sb04g030790 4 60803052 60804480 similar to Putative major intrinsic protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030790
1.4 Sb04g030800 4 60805108 60811497 similar to Cyclin-dependent kinase F-4 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030800
1.4 Sb04g030810 4 60814857 60819970 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030810
1.4 Sb04g030820 4 60825200 60826919 similar to Alternative oxidase https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030820
1.4 Sb04g030830 4 60829092 60831886 similar to Os02g0700300 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030830
1.4 Sb04g030840 4 60836442 60839338 similar to OSJNBa0083N12.7 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030840
1.4 Sb04g030850 4 60841878 60843904 similar to OSJNBa0083N12.3 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030850
1.4 Sb04g030860 4 60848366 60855160 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030860
1.4 Sb04g030870 4 60858849 60859592 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030870
1.4 Sb04g030880 4 60871641 60878836 similar to DNA topoisomerase 2 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030880
1.4 Sb04g030886 4 60879691 60880749 similar to DNA topoisomerase 2 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030886
1.4 Sb04g030890 4 60882231 60883393 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030890
1.4 Sb04g030895 4 60884721 60887911 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030895
1.4 Sb04g030900 4 60889074 60902122 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030900
1.4 Sb04g030910 4 60902804 60905419 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030910
1.4 Sb04g030930 4 60932443 60936039 weakly similar to WRKY transcription factor 66 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030930
1.4 Sb04g030920 4 60906594 60907087 similar to Putative reverse transcriptase https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb04g030920