Genes Under QTL for QPCGA4.16 (v3.0)


QTL Info

Version QTL Name Linkage Group bp_start bp_end Description
3.0 QPCGA4.16 4 61861258 61895388 Total phenolic content in gallic acid equivalents (g of GAE/kg of flour)

 

Genes Under QTL (total genes found: 3)

Selection signature information is provided based on Mace et al 2013 and Mace et al 2014, which identified signatures of purifying and balancing selection based on whole genome resequencing of 47 individuals categorised into three groups (1. Wild and Weedy genotypes, 2. Landraces, 3. Improved Inbreds).

Regions of the genome under purifying and balancing selection were identified using the population genetics summary statistics (θπ, θw, Tajima’s D and FST) in the following three population pairwise comparisons: (i) wild and weedy versus landraces to identify domestication events, (ii) landraces versus improved inbreds to identify improvement events, (iii) wild and weedy versus improved inbreds to identify both domestication and improvement events.

Version Gene Name LG bp_start bp_end Annotation Selection Signature Browse gene at JGI
3.0 Sobic.004G275200 4 61862258 61864319 zinc-binding protein, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.004G275200
3.0 Sobic.004G275400 4 61872877 61875219 RING-H2 finger protein ATL5G, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.004G275400
3.0 Sobic.004G275500 4 61879883 61883669 helix-loop-helix DNA-binding protein, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.004G275500