Genes Under QTL for QPSII3.37 (v1.4)


QTL Info

Version QTL Name Linkage Group bp_start bp_end Description
1.4 QPSII3.37 3 72099773 72301709 Photochemical quenching or fraction of PSII reaction centers that are open (qP) cumulative response over all time periods

 

Genes Under QTL (total genes found: 25)

Selection signature information is provided based on Mace et al 2013 and Mace et al 2014, which identified signatures of purifying and balancing selection based on whole genome resequencing of 47 individuals categorised into three groups (1. Wild and Weedy genotypes, 2. Landraces, 3. Improved Inbreds).

Regions of the genome under purifying and balancing selection were identified using the population genetics summary statistics (θπ, θw, Tajima’s D and FST) in the following three population pairwise comparisons: (i) wild and weedy versus landraces to identify domestication events, (ii) landraces versus improved inbreds to identify improvement events, (iii) wild and weedy versus improved inbreds to identify both domestication and improvement events.

Version Gene Name LG bp_start bp_end Annotation Selection Signature Browse gene at JGI
1.4 Sb03g044760 3 72120261 72120853 weakly similar to Possible membrane protein LEM1 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044760
1.4 Sb03g044770 3 72127913 72129581 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044770
1.4 Sb03g044780 3 72136141 72140648 similar to Putative potassium transporter https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044780
1.4 Sb03g044790 3 72144413 72149281 similar to Putative potassium transporter https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044790
1.4 Sb03g044800 3 72151735 72153777 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044800
1.4 Sb03g044810 3 72160806 72161519 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044810
1.4 Sb03g044820 3 72168851 72170155 weakly similar to Putative uncharacterized protein Balancing (domestication) https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044820
1.4 Sb03g044825 3 72173842 72174480 similar to Putative uncharacterized protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044825
1.4 Sb03g044830 3 72175571 72178648 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044830
1.4 Sb03g044840 3 72179611 72181318 similar to Putative uncharacterized protein OSJNBa0052O12.40 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044840
1.4 Sb03g044850 3 72181825 72184451 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044850
1.4 Sb03g044860 3 72185705 72188952 similar to Putative uncharacterized protein Balancing (improvement/domestication) https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044860
1.4 Sb03g044870 3 72191582 72192352 weakly similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044870
1.4 Sb03g044880 3 72196595 72197242 weakly similar to Putative uncharacterized protein Invariant: cultivated https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044880
1.4 Sb03g044890 3 72200498 72201103 similar to Putative uncharacterized protein Invariant: cultivated https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044890
1.4 Sb03g044900 3 72205421 72206181 similar to Putative uncharacterized protein Invariant: cultivated https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044900
1.4 Sb03g044910 3 72209974 72215993 similar to Putative uncharacterized protein P0506E04.35 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044910
1.4 Sb03g044920 3 72240549 72240929 weakly similar to Putative uncharacterized protein Invariant - W&W https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044920
1.4 Sb03g044930 3 72243669 72244040 similar to Putative uncharacterized protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044930
1.4 Sb03g044940 3 72265358 72265914 similar to Os01g0932700 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044940
1.4 Sb03g044950 3 72272549 72274574 similar to Copper chaperone (CCH)-related protein-like https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044950
1.4 Sb03g044960 3 72282436 72282865 similar to FPF1 protein-like Invariant: cultivated https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044960
1.4 Sb03g044970 3 72291571 72291795 similar to NADH-plastoquinone oxidoreductase subunit K Invariant - W&W https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044970
1.4 Sb03g044755 3 72114602 72118787 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044755
1.4 Sb03g044915 3 72223367 72223900 similar to Putative transposase protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb03g044915