Genes Under QTL for QRTNW2.22 (v1.4)


QTL Info

Version QTL Name Linkage Group bp_start bp_end Description
1.4 QRTNW2.22 2 2149525 2269688 Fraction of the network pixel found in the lower two-thirds of the network

 

Genes Under QTL (total genes found: 9)

Selection signature information is provided based on Mace et al 2013 and Mace et al 2014, which identified signatures of purifying and balancing selection based on whole genome resequencing of 47 individuals categorised into three groups (1. Wild and Weedy genotypes, 2. Landraces, 3. Improved Inbreds).

Regions of the genome under purifying and balancing selection were identified using the population genetics summary statistics (θπ, θw, Tajima’s D and FST) in the following three population pairwise comparisons: (i) wild and weedy versus landraces to identify domestication events, (ii) landraces versus improved inbreds to identify improvement events, (iii) wild and weedy versus improved inbreds to identify both domestication and improvement events.

Version Gene Name LG bp_start bp_end Annotation Selection Signature Browse gene at JGI
1.4 Sb02g002110 2 2153679 2157872 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb02g002110
1.4 Sb02g002120 2 2158797 2161515 similar to DnaJ protein family-like protein Balancing (improvement/domestication) https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb02g002120
1.4 Sb02g002130 2 2175436 2176236 similar to Pathogenesis related protein-1 Invariant - W&W https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb02g002130
1.4 Sb02g002150 2 2187398 2188136 similar to Pathogenesis related protein-1 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb02g002150
1.4 Sb02g002160 2 2189866 2192270 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb02g002160
1.4 Sb02g002170 2 2195914 2201288 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb02g002170
1.4 Sb02g002180 2 2205025 2206803 similar to Putative uncharacterized protein P0599F04.7 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb02g002180
1.4 Sb02g002190 2 2216606 2218936 weakly similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb02g002190
1.4 Sb02g002140 2 2179671 2180711 weakly similar to Putative reverse transcriptase https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb02g002140