Genes Under QTL for QDMGR1.19 (v1.4)


QTL Info

Version QTL Name Linkage Group bp_start bp_end Description
1.4 QDMGR1.19 1 67518341 67631156 Mean dry matter growth rate (DMGR) across environments

 

Genes Under QTL (total genes found: 12)

Selection signature information is provided based on Mace et al 2013 and Mace et al 2014, which identified signatures of purifying and balancing selection based on whole genome resequencing of 47 individuals categorised into three groups (1. Wild and Weedy genotypes, 2. Landraces, 3. Improved Inbreds).

Regions of the genome under purifying and balancing selection were identified using the population genetics summary statistics (θπ, θw, Tajima’s D and FST) in the following three population pairwise comparisons: (i) wild and weedy versus landraces to identify domestication events, (ii) landraces versus improved inbreds to identify improvement events, (iii) wild and weedy versus improved inbreds to identify both domestication and improvement events.

Version Gene Name LG bp_start bp_end Annotation Selection Signature Browse gene at JGI
1.4 Sb01g044420 1 67527437 67528255 similar to Expressed protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g044420
1.4 Sb01g044430 1 67532193 67537252 weakly similar to Pumilio-family RNA binding repeat containing protein, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g044430
1.4 Sb01g044440 1 67538460 67540436 similar to Ras-related protein Rab-6A, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g044440
1.4 Sb01g044450 1 67555746 67557224 similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g044450
1.4 Sb01g044460 1 67560187 67564611 similar to Dor1-like family protein, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g044460
1.4 Sb01g044470 1 67568809 67573214 similar to Mitochondrial carrier protein, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g044470
1.4 Sb01g044480 1 67576601 67583786 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g044480
1.4 Sb01g044490 1 67590805 67594920 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g044490
1.4 Sb01g044500 1 67606065 67606893 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g044500
1.4 Sb01g044505 1 67612260 67612981 similar to Os07g0666200 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g044505
1.4 Sb01g044510 1 67623006 67629132 similar to Os07g0665900 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g044510
1.4 Sb01g044485 1 67585849 67586537 weakly similar to Os02g0566300 protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g044485