Genes Under QTL for QFBMS1.71 (v1.4)


QTL Info

Version QTL Name Linkage Group bp_start bp_end Description
1.4 QFBMS1.71 1 55180948 55782178 Total fresh biomass (t/ac)

 

Genes Under QTL (total genes found: 60)

Selection signature information is provided based on Mace et al 2013 and Mace et al 2014, which identified signatures of purifying and balancing selection based on whole genome resequencing of 47 individuals categorised into three groups (1. Wild and Weedy genotypes, 2. Landraces, 3. Improved Inbreds).

Regions of the genome under purifying and balancing selection were identified using the population genetics summary statistics (θπ, θw, Tajima’s D and FST) in the following three population pairwise comparisons: (i) wild and weedy versus landraces to identify domestication events, (ii) landraces versus improved inbreds to identify improvement events, (iii) wild and weedy versus improved inbreds to identify both domestication and improvement events.

Version Gene Name LG bp_start bp_end Annotation Selection Signature Browse gene at JGI
1.4 Sb01g032300 1 55210131 55212008 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032300
1.4 Sb01g032310 1 55212512 55214766 similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032310
1.4 Sb01g032320 1 55217851 55221049 similar to Calcium binding EGF domain containing protein, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032320
1.4 Sb01g032330 1 55230317 55233258 similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032330
1.4 Sb01g032340 1 55241992 55249303 similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032340
1.4 Sb01g032350 1 55251847 55253701 weakly similar to OSJNBa0035O13.10 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032350
1.4 Sb01g032360 1 55264238 55270167 similar to Putative uncharacterized protein Balancing (improvement/domestication) https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032360
1.4 Sb01g032370 1 55271209 55274697 similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032370
1.4 Sb01g032380 1 55276879 55281734 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032380
1.4 Sb01g032390 1 55286487 55291131 weakly similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032390
1.4 Sb01g032400 1 55298430 55302868 weakly similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032400
1.4 Sb01g032410 1 55304579 55305343 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032410
1.4 Sb01g032420 1 55312872 55322352 similar to Putative Vps52 / Sac2 family protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032420
1.4 Sb01g032430 1 55323057 55325130 similar to T1K7.26 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032430
1.4 Sb01g032440 1 55327870 55329946 similar to Phytochrome P450 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032440
1.4 Sb01g032450 1 55350314 55355172 similar to Probable 6-phosphogluconolactonase 1 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032450
1.4 Sb01g032460 1 55357992 55360382 similar to COBRA-like 2 protein precursor https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032460
1.4 Sb01g032470 1 55360473 55360703 Predicted protein Invariant: cultivated https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032470
1.4 Sb01g032480 1 55361264 55363460 similar to Brittle stalk-2 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032480
1.4 Sb01g032490 1 55372121 55375842 similar to Translocase inner membrane-like protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032490
1.4 Sb01g032500 1 55377391 55378089 similar to Translocase inner membrane-like protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032500
1.4 Sb01g032510 1 55397075 55399688 similar to MAP3K-like protein kinase, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032510
1.4 Sb01g032520 1 55403923 55404888 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032520
1.4 Sb01g032530 1 55417046 55418124 similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032530
1.4 Sb01g032540 1 55423218 55424552 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032540
1.4 Sb01g032550 1 55435826 55436737 similar to NAD dependent epimerase/dehydratase family protein, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032550
1.4 Sb01g032560 1 55447215 55447868 weakly similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032560
1.4 Sb01g032570 1 55462887 55467732 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032570
1.4 Sb01g032575 1 55474892 55477124 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032575
1.4 Sb01g032580 1 55492228 55493611 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032580
1.4 Sb01g032590 1 55504152 55504829 similar to HAP3-like transcriptional-activator Invariant - W&W https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032590
1.4 Sb01g032593 1 55505733 55511346 weakly similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032593
1.4 Sb01g032600 1 55530247 55532611 similar to Putative cytochrome P450 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032600
1.4 Sb01g032610 1 55565828 55572542 similar to Putative sesquiterpene synthase https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032610
1.4 Sb01g032620 1 55573049 55576001 similar to Glucose-6-phosphate 1-dehydrogenase Balancing (improvement) https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032620
1.4 Sb01g032630 1 55580898 55581973 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032630
1.4 Sb01g032640 1 55584531 55585451 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032640
1.4 Sb01g032650 1 55588605 55591199 weakly similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032650
1.4 Sb01g032660 1 55592926 55599095 similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032660
1.4 Sb01g032670 1 55603874 55607087 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032670
1.4 Sb01g032680 1 55607481 55610054 similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032680
1.4 Sb01g032690 1 55614342 55614851 similar to Os03g0411300 protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032690
1.4 Sb01g032700 1 55624288 55629736 similar to E3 ubiquitin-protein ligase BRE1-like 2 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032700
1.4 Sb01g032710 1 55640041 55643325 similar to HAP2 subunit of HAP complex https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032710
1.4 Sb01g032715 1 55652108 55655021 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032715
1.4 Sb01g032720 1 55657279 55658814 similar to Os03g0439500 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032720
1.4 Sb01g032730 1 55663536 55665957 similar to Probable small nuclear ribonucleoprotein G https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032730
1.4 Sb01g032740 1 55666263 55669933 similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032740
1.4 Sb01g032750 1 55674210 55675982 similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032750
1.4 Sb01g032760 1 55684998 55687586 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032760
1.4 Sb01g032770 1 55688190 55689966 weakly similar to OSMYB3 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032770
1.4 Sb01g032780 1 55698087 55701800 similar to Os10g0396300 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032780
1.4 Sb01g032785 1 55709516 55713014 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032785
1.4 Sb01g032790 1 55723882 55726298 weakly similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032790
1.4 Sb01g032800 1 55733763 55735387 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032800
1.4 Sb01g032810 1 55738797 55744946 similar to Transcription initiation factor IID, 31kD subunit family protein, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032810
1.4 Sb01g032820 1 55767177 55772782 similar to Serine/threonine-protein kinase NAK, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032820
1.4 Sb01g032830 1 55779477 55784427 similar to Grain length and weight protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032830
1.4 Sb01g032485 1 55369557 55370081 Predicted protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032485
1.4 Sb01g032596 1 55520839 55526125 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g032596