Genes Under QTL for QRWPA6.24 (v3.0)


QTL Info

Version QTL Name Linkage Group bp_start bp_end Description
3.0 QRWPA6.24 6 42566960 42676589 root-width profile as a function of depth

 

Genes Under QTL (total genes found: 9)

Selection signature information is provided based on Mace et al 2013 and Mace et al 2014, which identified signatures of purifying and balancing selection based on whole genome resequencing of 47 individuals categorised into three groups (1. Wild and Weedy genotypes, 2. Landraces, 3. Improved Inbreds).

Regions of the genome under purifying and balancing selection were identified using the population genetics summary statistics (θπ, θw, Tajima’s D and FST) in the following three population pairwise comparisons: (i) wild and weedy versus landraces to identify domestication events, (ii) landraces versus improved inbreds to identify improvement events, (iii) wild and weedy versus improved inbreds to identify both domestication and improvement events.

Version Gene Name LG bp_start bp_end Annotation Selection Signature Browse gene at JGI
3.0 Sobic.006G065800 6 42573605 42580030 amino acid kinase, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.006G065800
3.0 Sobic.006G065850 6 42575942 42577052 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.006G065850
3.0 Sobic.006G065900 6 42581293 42584350 expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.006G065900
3.0 Sobic.006G066000 6 42591143 42596410 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.006G066000
3.0 Sobic.006G066050 6 42602047 42605883 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.006G066050
3.0 Sobic.006G066100 6 42631203 42632539 conserved hypothetical protein Invariant: cultivated https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.006G066100
3.0 Sobic.006G066150 6 42650058 42650879 retrotransposon protein, putative, unclassified, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.006G066150
3.0 Sobic.006G066200 6 42651494 42654196 prephenate dehydratase domain containing protein, expressed Balancing (improvement/domestication) https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.006G066200
3.0 Sobic.006G066300 6 42662100 42663221 expressed protein Invariant: cultivated https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.006G066300