Genes Under QTL for QLODG2.15 (v2.1)


QTL Info

Version QTL Name Linkage Group bp_start bp_end Description
2.1 QLODG2.15 2 62276572 62412615 Lodging (%)

 

Genes Under QTL (total genes found: 16)

Selection signature information is provided based on Mace et al 2013 and Mace et al 2014, which identified signatures of purifying and balancing selection based on whole genome resequencing of 47 individuals categorised into three groups (1. Wild and Weedy genotypes, 2. Landraces, 3. Improved Inbreds).

Regions of the genome under purifying and balancing selection were identified using the population genetics summary statistics (θπ, θw, Tajima’s D and FST) in the following three population pairwise comparisons: (i) wild and weedy versus landraces to identify domestication events, (ii) landraces versus improved inbreds to identify improvement events, (iii) wild and weedy versus improved inbreds to identify both domestication and improvement events.

Version Gene Name LG bp_start bp_end Annotation Selection Signature Browse gene at JGI
2.1 Sobic.002G232100 2 62277806 62278681 similar to Putative uncharacterized protein Invariant - W&W https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.002G232100
2.1 Sobic.002G232200 2 62288568 62294478 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.002G232200
2.1 Sobic.002G232300 2 62294787 62295149 weakly similar to Putative auxin-induced protein family https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.002G232300
2.1 Sobic.002G232400 2 62298729 62303014 similar to Coatomer subunit zeta-2 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.002G232400
2.1 Sobic.002G232500 2 62303850 62307433 similar to Putative ripening regulated protein DDTFR18 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.002G232500
2.1 Sobic.002G232600 2 62311327 62313974 similar to Putative ripening regulated protein DDTFR18 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.002G232600
2.1 Sobic.002G232700 2 62317431 62318483 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.002G232700
2.1 Sobic.002G232800 2 62339167 62341103 similar to RING-H2 zinc finger protein ATL6-like https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.002G232800
2.1 Sobic.002G232900 2 62354718 62356986 similar to Helix-loop-helix DNA-binding protein-like https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.002G232900
2.1 Sobic.002G233000 2 62360885 62363131 similar to Os09g0468800 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.002G233000
2.1 Sobic.002G233100 2 62366483 62368771 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.002G233100
2.1 Sobic.002G233200 2 62369348 62370461 weakly similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.002G233200
2.1 Sobic.002G233300 2 62374161 62375362 weakly similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.002G233300
2.1 Sobic.002G233500 2 62382574 62383663 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.002G233500
2.1 Sobic.002G232000 2 62276009 62277197 purine permease, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.002G232000
2.1 Sobic.002G233400 2 62378369 62379709 plastocyanin-like domain containing protein, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.002G233400