Genes Under QTL for QDTFL1.47 (v1.4)


QTL Info

Version QTL Name Linkage Group bp_start bp_end Description
1.4 QDTFL1.47 1 72327775 72711626 Maturity (# days from planting to 50% anthesis)

 

Genes Under QTL (total genes found: 46)

Selection signature information is provided based on Mace et al 2013 and Mace et al 2014, which identified signatures of purifying and balancing selection based on whole genome resequencing of 47 individuals categorised into three groups (1. Wild and Weedy genotypes, 2. Landraces, 3. Improved Inbreds).

Regions of the genome under purifying and balancing selection were identified using the population genetics summary statistics (θπ, θw, Tajima’s D and FST) in the following three population pairwise comparisons: (i) wild and weedy versus landraces to identify domestication events, (ii) landraces versus improved inbreds to identify improvement events, (iii) wild and weedy versus improved inbreds to identify both domestication and improvement events.

Version Gene Name LG bp_start bp_end Annotation Selection Signature Browse gene at JGI
1.4 Sb01g049320 1 72327775 72330000 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049320
1.4 Sb01g049330 1 72332924 72333657 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049330
1.4 Sb01g049340 1 72355134 72358696 similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049340
1.4 Sb01g049350 1 72358953 72362187 similar to Cell division control protein 2 homolog https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049350
1.4 Sb01g049360 1 72367809 72371326 similar to UDP-galactose transporter, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049360
1.4 Sb01g049370 1 72377697 72382304 similar to T-complex protein 1, delta subunit Purifying (domestication) https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049370
1.4 Sb01g049380 1 72384871 72387260 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049380
1.4 Sb01g049390 1 72393693 72399207 weakly similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049390
1.4 Sb01g049400 1 72407543 72408316 similar to AP2 domain containing protein, expressed Invariant - W&W https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049400
1.4 Sb01g049410 1 72408763 72411925 similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049410
1.4 Sb01g049420 1 72412652 72413547 similar to Glycosyl hydrolases family 16 protein, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049420
1.4 Sb01g049430 1 72414730 72417310 similar to Os04g0177400 protein Balancing (domestication) https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049430
1.4 Sb01g049440 1 72419383 72420711 weakly similar to Putative uncharacterized protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049440
1.4 Sb01g049450 1 72421113 72423342 similar to Peroxisomal membrane protein PEX11-1, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049450
1.4 Sb01g049460 1 72425937 72426974 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049460
1.4 Sb01g049470 1 72432374 72434169 similar to Os03g0116900 protein Invariant: cultivated https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049470
1.4 Sb01g049480 1 72438586 72440949 similar to Dihydrodipicolinate reductase, C-terminus family protein, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049480
1.4 Sb01g049490 1 72442009 72445919 similar to F-box family protein, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049490
1.4 Sb01g049500 1 72447907 72450487 similar to F-box family protein, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049500
1.4 Sb01g049510 1 72459797 72464464 similar to RCOP11 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049510
1.4 Sb01g049520 1 72464861 72467556 similar to Membrane protein, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049520
1.4 Sb01g049530 1 72472728 72478692 similar to Hydrolase, alpha/beta fold family protein, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049530
1.4 Sb01g049540 1 72484929 72490408 similar to Os03g0116000 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049540
1.4 Sb01g049550 1 72510807 72512654 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049550
1.4 Sb01g049560 1 72517435 72519593 similar to Pyridoxine 5'-phosphate oxidase, putative, expressed Balancing (improvement/domestication) https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049560
1.4 Sb01g049570 1 72524121 72528534 similar to Expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049570
1.4 Sb01g049590 1 72559585 72564208 similar to Arginine/serine-rich-splicing factor RSP31 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049590
1.4 Sb01g049600 1 72565216 72566798 similar to Os03g0115300 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049600
1.4 Sb01g049610 1 72568194 72569708 similar to Putative uncharacterized protein Invariant - W&W https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049610
1.4 Sb01g049620 1 72580473 72585967 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049620
1.4 Sb01g049630 1 72586718 72587396 similar to Os03g0115000 protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049630
1.4 Sb01g049640 1 72589554 72590650 similar to Putative mitochondrial inner membrane protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049640
1.4 Sb01g049650 1 72593087 72596688 similar to Major Facilitator Superfamily protein, expressed Balancing (improvement/domestication) https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049650
1.4 Sb01g049660 1 72601391 72601999 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049660
1.4 Sb01g049670 1 72602848 72604918 similar to Mitochondrial import inner membrane translocase subunit Tim9 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049670
1.4 Sb01g049680 1 72610738 72612315 similar to Putative uncharacterized protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049680
1.4 Sb01g049690 1 72615329 72623720 similar to Protein kinase, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049690
1.4 Sb01g049700 1 72632438 72634221 similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049700
1.4 Sb01g049710 1 72636249 72637013 similar to Putative uncharacterized protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049710
1.4 Sb01g049720 1 72638118 72644658 similar to Putative uncharacterized protein OSJNBa0090O10.9 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049720
1.4 Sb01g049730 1 72659681 72660269 similar to Putative uncharacterized protein Invariant: cultivated and wild https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049730
1.4 Sb01g049735 1 72664796 72670947 weakly similar to Putative uncharacterized protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049735
1.4 Sb01g049740 1 72688705 72692155 similar to Os03g0113500 protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049740
1.4 Sb01g049580 1 72532657 72534353 Predicted protein Invariant - W&W https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049580
1.4 Sb01g049723 1 72649335 72649751 similar to Transposon protein, putative, CACTA, En/Spm sub-class https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049723
1.4 Sb01g049726 1 72651380 72654364 Predicted protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sb01g049726