Genes Under QTL for QFBMS3.8 (v3.0)


QTL Info

Version QTL Name Linkage Group bp_start bp_end Description
3.0 QFBMS3.8 3 53154461 53446841 Total fresh biomass (t/ac)

 

Genes Under QTL (total genes found: 28)

Selection signature information is provided based on Mace et al 2013 and Mace et al 2014, which identified signatures of purifying and balancing selection based on whole genome resequencing of 47 individuals categorised into three groups (1. Wild and Weedy genotypes, 2. Landraces, 3. Improved Inbreds).

Regions of the genome under purifying and balancing selection were identified using the population genetics summary statistics (θπ, θw, Tajima’s D and FST) in the following three population pairwise comparisons: (i) wild and weedy versus landraces to identify domestication events, (ii) landraces versus improved inbreds to identify improvement events, (iii) wild and weedy versus improved inbreds to identify both domestication and improvement events.

Version Gene Name LG bp_start bp_end Annotation Selection Signature Browse gene at JGI
3.0 Sobic.003G201900 3 53157958 53162720 coiled-coil domain-containing protein, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G201900
3.0 Sobic.003G202000 3 53168281 53169183 OsSAUR15 - Auxin-responsive SAUR gene family member https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G202000
3.0 Sobic.003G202100 3 53175259 53179402 Uncharacterized ACR, COG1565 containing protein, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G202100
3.0 Sobic.003G202200 3 53189808 53194411 uncharacterized protein PA4923, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G202200
3.0 Sobic.003G202300 3 53222957 53226560 S1 RNA binding domain containing protein, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G202300
3.0 Sobic.003G202400 3 53226710 53230300 expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G202400
3.0 Sobic.003G202500 3 53230301 53233505 methyltransferase, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G202500
3.0 Sobic.003G202600 3 53255519 53260814 single myb histone, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G202600
3.0 Sobic.003G202700 3 53265340 53267760 pentatricopeptide, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G202700
3.0 Sobic.003G202800 3 53279551 53282296 holocarboxylase synthetase, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G202800
3.0 Sobic.003G202900 3 53281760 53285048 expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G202900
3.0 Sobic.003G203000 3 53289864 53291308 high light inducible protein, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G203000
3.0 Sobic.003G203100 3 53292123 53296226 pentatricopeptide, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G203100
3.0 Sobic.003G203200 3 53299950 53301692 expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G203200
3.0 Sobic.003G203300 3 53302946 53308339 stress regulated protein, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G203300
3.0 Sobic.003G203400 3 53318206 53322927 serine/threonine-protein kinase AFC3, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G203400
3.0 Sobic.003G203500 3 53331225 53339384 aldehyde dehydrogenase, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G203500
3.0 Sobic.003G203600 3 53368965 53376625 aldehyde dehydrogenase, putative, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G203600
3.0 Sobic.003G203700 3 53381174 53381383 hypothetical protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G203700
3.0 Sobic.003G203800 3 53387226 53389397 B3 DNA binding domain containing protein, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G203800
3.0 Sobic.003G203833 3 53390198 53390866 B3 DNA binding domain containing protein, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G203833
3.0 Sobic.003G203866 3 53392494 53394662 https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G203866
3.0 Sobic.003G203900 3 53397007 53397725 PME/invertase inhibitor, putative, expressed Purifying (domestication) https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G203900
3.0 Sobic.003G204000 3 53398377 53400535 expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G204000
3.0 Sobic.003G204100 3 53401220 53413348 expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G204100
3.0 Sobic.003G204200 3 53414318 53419766 B3 DNA binding domain containing protein, expressed https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G204200
3.0 Sobic.003G204300 3 53425537 53426177 expressed protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G204300
3.0 Sobic.003G204400 3 53430845 53431682 hypothetical protein https://phytozome.jgi.doe.gov/pz/portal.html#!gene?search=1&detail=1&method=5228&searchText=locusName:Sobic.003G204400